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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
414
ChIP-seq
180
total RNA-seq
22
ATAC-seq
5
DNase-seq
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
WGBS
1
RRBS
1
single cell RNA-seq
Assay category
414
DNA binding
184
Transcription
27
DNA accessibility
3
3D chromatin structure
3
DNA methylation
Target of assay
323
transcription factor
93
control
82
recombinant protein
67
histone
67
histone modification
RNA binding protein
45
narrow histone mark
chromatin remodeller
22
broad histone mark
2
other context
2
other post-translational modification
Date released
272
November, 2017
194
May, 2020
57
December, 2017
August, 2017
40
May, 2022
30
November, 2018
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
583
bam
520
bigWig
365
fastq
339
bed narrowPeak
282
bigBed narrowPeak
165
tsv
66
tagAlign
56
bed broadPeak
56
bigBed broadPeak
10
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
2
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
634
Homo sapiens
Biosample type
304
cell line
303
tissue
14
primary cell
13
in vitro differentiated cells
Organ
747
pancreas
634
liver
553
connective tissue
487
epithelium
429
adipose tissue
382
heart
349
kidney
283
brain
231
vasculature
226
blood vessel
159
bone element
140
artery
122
limb
70
musculature of body
60
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
634
AMP
Genome assembly (visualization)
521
hg19
447
GRCh38
Lab
594
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
14
inconsistent control read length
lab.title!
Bing Ren, UCSD
month_released!
August, 2017
target.investigated_as!
RNA binding protein
chromatin remodeller
BIOSAMPLE
ASSAY
634 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
small RNA-seq
WGBS
RRBS
single cell RNA-seq
cell line
HepG2
294
5
1
1
2
1
tissue
liver
94
167
20
2
1
1
1
1
right lobe of liver
9
3
1
2
1
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
13
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