Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
180
total RNA-seq
23
ATAC-seq
8
snATAC-seq
4
WGBS
3
DNase-seq
3
Hi-C
3
small RNA-seq
2
RRBS
2
pCHi-C
Assay category
530
DNA binding
183
Transcription
34
DNA accessibility
6
DNA methylation
3
3D chromatin structure
Target of assay
317
transcription factor
107
control
101
histone modification
100
histone
66
recombinant protein
59
narrow histone mark
46
RNA binding protein
41
broad histone mark
26
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
November, 2018
63
December, 2017
54
August, 2017
40
May, 2022
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
7
October, 2019
5
December, 2019
4
August, 2021
February, 2021
3
March, 2020
2
June, 2019
1
February, 2020
1
January, 2018
Available data
672
bam
599
bigWig
457
fastq
417
bed narrowPeak
349
bigBed narrowPeak
165
tsv
86
tagAlign
60
bed broadPeak
60
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
1
hdf5
1
hic
Organism
758
Homo sapiens
Biosample type
368
cell line
353
tissue
22
primary cell
15
in vitro differentiated cells
Organ
903
pancreas
704
liver
492
epithelium
344
kidney
327
heart
284
brain
228
connective tissue
170
vasculature
164
blood vessel
116
limb
104
adipose tissue
96
musculature of body
75
artery
61
eye
54
blood
54
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
ureter
16
spleen
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
750
AMP
8
T1D
Genome assembly (visualization)
602
hg19
520
GRCh38
Lab
710
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
22
inconsistent control read length
4
inconsistent control run_type
lab.title!
Bing Ren, UCSD
month_released!
February, 2021
November, 2018
BIOSAMPLE
ASSAY
758 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
small RNA-seq
RRBS
pCHi-C
cell line
HepG2
315
5
1
1
GM12878
45
1
tissue
liver
141
167
20
3
1
1
1
1
right lobe of liver
10
3
1
1
1
2
primary cell
hepatocyte
4
5
1
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
15
Download