Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
69
total RNA-seq
50
ChIP-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
175
Transcription
82
DNA accessibility
50
DNA binding
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
14
transcription factor
12
broad histone mark
12
control
12
narrow histone mark
6
RNA binding protein
6
chromatin remodeller
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
314
October, 2019
283
August, 2021
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
118
tsv
113
bed narrowPeak
79
bam
64
xls
59
bigWig
57
txt
30
fastq
24
tagAlign
21
bigBed narrowPeak
5
bed bed3+
1
hic
Organism
312
Homo sapiens
Biosample type
234
tissue
42
in vitro differentiated cells
33
cell line
4
primary cell
Organ
128
kidney
92
heart
18
blood
18
bodily fluid
9
liver
8
embryo
7
spleen
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
2
artery
2
pancreas
1
adipose tissue
Project
313
AMP
Genome assembly (visualization)
131
GRCh38
71
hg19
Lab
181
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
lab.title!
Bing Ren, UCSD
month_released!
October, 2018
September, 2017
BIOSAMPLE
ASSAY
313 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
GM12878
18
H1-hESC
8
HepG2
5
EndoC_BH1
2
primary cell
hepatocyte
4
See all biosamples
Download