Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
104
single cell RNA-seq
76
ATAC-seq
69
total RNA-seq
6
snATAC-seq
4
Capture-C
1
Hi-C
1
RNA microarray
Assay category
173
Transcription
165
DNA binding
82
DNA accessibility
1
3D chromatin structure
Target of assay
114
histone
114
histone modification
70
broad histone mark
44
narrow histone mark
33
control
18
transcription factor
10
RNA binding protein
6
chromatin remodeller
Date released
649
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
288
October, 2019
281
August, 2021
216
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
115
May, 2019
105
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
207
bed narrowPeak
194
bam
153
bigWig
116
tsv
115
bigBed narrowPeak
64
xls
57
txt
30
fastq
24
tagAlign
5
bed bed3+
1
hic
Organism
425
Homo sapiens
Biosample type
342
tissue
42
in vitro differentiated cells
33
cell line
9
primary cell
Organ
133
kidney
113
heart
56
blood vessel
56
vasculature
28
brain
18
blood
18
bodily fluid
11
epithelium
9
liver
8
embryo
artery
7
limb
7
musculature of body
7
spleen
5
connective tissue
4
pancreas
1
adipose tissue
Project
426
AMP
Genome assembly (visualization)
224
GRCh38
165
hg19
Lab
294
AMP-T2D consortium
128
Katalin Susztak, Upenn
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
5
inconsistent ontology term
lab.title!
Bing Ren, UCSD
organ_slims!
artery
BIOSAMPLE
ASSAY
426 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
snATAC-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
right cardiac atrium
6
18
heart left ventricle
18
left cardiac atrium
18
aorta
13
4
+ See 18 more…
in vitro differentiated cells
neural progenitor cell
21
10
7
adipocyte
1
1
osteoblast
1
1
cell line
GM12878
18
H1-hESC
8
HepG2
5
EndoC_BH1
2
primary cell
kidney epithelial cell
5
hepatocyte
4
See all biosamples
Download