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Embedding Matrix

Click or enter search terms to filter the experiments included in the matrix.

Embeddings type
  • 55Gene expression
  • 12Accessible chromatin
Date released
  • 32May, 2022
  • 9June, 2025
  • 8April, 2025
  • 4February, 2025
  • 2August, 2021
  • 2July, 2025
  • 2October, 2024
  • 2September, 2021
  • 1February, 2021
  • 1February, 2023
  • 1March, 2023
  • 1March, 2024
  • 1September, 2020
  • 1September, 2023
Available data
  • 50h5ad
  • 14rds
  • 8tsv
  • 6mtx
  • 1bed bed3
  • 1cloupe
  • 1tbi
Organism
  • 64Homo sapiens
Biosample type
  • 62tissue
  • 7primary cell
Organ
  • 9musculature of body
  • 9pancreas
  • 6connective tissue
  • 5adipose tissue
  • 5liver
  • 5vasculature
  • 4artery
  • 4blood vessel
  • 4heart
  • 3blood
  • 3bodily fluid
  • 3kidney
  • 3lung
  • 2bone element
  • 2epithelium
  • 2intestine
  • 2mouth
  • 1bone marrow
  • 1brain
  • 1eye
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1prostate gland
  • 1skin of body
  • 1small intestine
  • 1spleen
  • 1thymus
  • 1tongue
  • 1trachea
  • 1uterus
Project
  • 61AMP
  • 2LungMap
  • 2T1D
  • 2community
Genome assembly (visualization)
  • 1hg19
Encyclopedia version
  • 1fusion_consented.snatac.h5ad
  • 1fusion_consented.snrna_post_decontx.h5ad
lab.title!
  • Bing Ren, UCSD
organ_slims!!
  • intestine
BIOSAMPLE
TYPE

67 results

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Clear Filters
Gene expression
Accessible chromatin
tissue
islet of Langerhans24
skeletal muscle42
heart5
liver41
pancreas41
artery31
kidney3
lung21
visceral fat21
peripheral blood mononuclear cell11
skeletal muscle tissue11
bladder organ1
blood1
bone marrow1
carotid canal1
eye1
fat pad1
hypothalamus1
large intestine1
lymph node1
major salivary gland1
mammary gland1
muscle organ1
prostate gland1
skin of body1
small intestine1
spleen1
thymus1
tongue1
trachea1
uterus1
vasculature1
visceral abdominal adipose tissue1
primary cell
islet of Langerhans11
pancreas11
peripheral blood mononuclear cell11
cell1
endothelial cell1
epithelial cell1
immune system1
stromal cell1
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