Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 89candidate regulatory elements
  • 61target gene predictions
  • 55accessible chromatin
  • 52gene expression
  • 48chromatin state
  • 31binding sites
  • 25eQTL
  • 25histone modifications
  • 18differential activity
  • 9variant allelic effects
  • 8Fine-mapped variants
  • 3caQTL
  • 2pQTL
  • 2sQTL
Date released
  • 120September, 2022
  • 109February, 2021
  • 20June, 2020
  • 17September, 2023
  • 16May, 2021
  • 12October, 2022
  • 11August, 2021
  • 11February, 2024
  • 10January, 2020
  • 10March, 2025
  • 10May, 2020
  • 10May, 2024
  • 9February, 2020
  • 9March, 2020
  • 7August, 2017
  • 7March, 2023
  • 7November, 2022
  • 6January, 2022
  • 5October, 2025
  • 3April, 2020
  • 3November, 2020
  • 2January, 2021
  • 2January, 2025
  • 2July, 2025
  • 2October, 2019
  • 2September, 2018
  • 1August, 2018
  • 1February, 2023
  • 1January, 2018
  • 1June, 2021
  • 1May, 2022
Available data
  • 288bed bed3+
  • 76tsv
  • 41bed bed9
  • 23bigWig
  • 7txt
  • 2bigBed bed9
  • 2csv
  • 1bed bed3
  • 1bed narrowPeak
  • 1bigBed narrowPeak
Organism
  • 428Homo sapiens
Collection Tags
  • 120EpiMap
  • 65ChIP-Atlas
  • 61DGA
  • 58ENCODE
  • 38 T2DKP
  • 17STARNET
  • 17T2DKP
  • 16AMP
  • 15KPMP
  • 10CMDGA
  • 10GTEx
  • 9HPAP
  • 9T1D
  • 7T2D
  • 6FNIH_projects-heart
  • 6eQTLCatalogue
  • 2FNIH_projects-liver
  • 1BLUEPRINT
Biosample type
  • 236primary cell
  • 110tissue
  • 50in vitro differentiated cells
  • 31cell line
  • 1stem cell
Organ
  • 2910vasculature
  • 2859bodily fluid
  • 2850blood vessel
  • 2848blood
  • 2658vein
  • 810epithelium
  • 649kidney
  • 467brain
  • 428connective tissue
  • 384musculature of body
  • 301lung
  • 267intestine
  • 256pancreas
  • 247heart
  • 244limb
  • 213embryo
  • 193skin of body
  • 168large intestine
  • 162liver
  • 143extraembryonic component
  • 108stomach
  • 105eye
  • 104adipose tissue
  • 88bone element
  • 84artery
  • 81uterus
  • 80mammary gland
  • 80small intestine
  • 77prostate gland
  • 71placenta
  • 64penis
  • 64ureter
  • 62adrenal gland
  • 62lymph node
  • 48gonad
  • 48thymus
  • 43spinal cord
  • 39esophagus
  • 34spleen
  • 26testis
  • 25nerve
  • 24lymphoid tissue
  • 21lymphatic vessel
  • 21ovary
  • 20thyroid gland
  • 19mouth
  • 18skeleton
  • 13breast
  • 13bronchus
  • 13pituitary gland
  • 12bone marrow
  • 10tongue
  • 10urinary bladder
  • 10vagina
  • 5trachea
  • 4nose
  • 1pericardium
Project
  • 400AMP
  • 15KPMP
  • 4ITG
  • 4community
  • 3LungMap
  • 2T1D
Genome assembly (visualization)
  • 336hg19
  • 80GRCh38
  • 2hg18
Encyclopedia version
  • 1Adipocyte.narrowpeak.bed.gz Adipocyte.consensus_summit_features.bed.gz
lab.title!
  • Bing Ren, UCSD
BIOSAMPLE
TYPE

428 results

search-icontable-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
gene expression
chromatin state
binding sites
eQTL
histone modifications
differential activity
variant allelic effects
Fine-mapped variants
caQTL
pQTL
sQTL
primary cell
osteoblast2252132
fibroblast of lung6442
foreskin fibroblast621142
fibroblast of dermis4431
fibroblast of cardiac tissue333
tissue
adipose tissue78236141
subcutaneous adipose tissue22618214
omental fat pad5222223
visceral fat112231
subcutaneous abdominal adipose tissue51
in vitro differentiated cells
adipocyte4641611
mesenchymal stem cell331211
chondrocyte5
fibroblast11
Adipose SGBS cell line (adipocyte)1
cell line
GM23248211111
fibroblast of cardiac tissue212
HT1080211
foreskin fibroblast111
adipose tissue derived mesenchymal stem cell11
stem cell
mesenchymal stem cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2025 Regents of the University of California.

  • UC San Diego