Home
    • Project overview
    • Policies
    • News
    • Contact
    • Experiments
    • Annotations
    • Single Cell Embeddings
    • Statistical Models
    • Gene Perturbations
    • Data Standards & QC
    • Pipelines
    • Consortia
    • Publications
    • Single Cell Browser
    • Getting started
    • Schema

Annotation Matrix

Click or enter search terms to filter the experiments included in the matrix.

Annotation type
  • 134target gene predictions
  • 113candidate regulatory elements
  • 59chromatin state
  • 10accessible chromatin
  • 8histone modifications
  • 6binding sites
  • 3eQTL
  • 3gene expression
Date released
  • 164September, 2022
  • 71February, 2021
  • 69July, 2026
  • 10June, 2020
  • 6May, 2021
  • 4August, 2017
  • 3February, 2024
  • 3January, 2022
  • 3March, 2024
  • 2March, 2020
  • 1October, 2022
Available data
  • 278bed bed3+
  • 55bed bed9
  • 3tsv
Organism
  • 336Homo sapiens
Collection Tags
  • 165EpiMap
  • 69ENCODE-rE2G
  • 59ENCODE
  • 23ChIP-Atlas
  • 8DGA
  • 3GTEx
  • 3T1D
  • 3T2D
  • 3eQTLCatalogue
  • 24DN
Biosample type
  • 277tissue
  • 58cell line
  • 1primary cell
Organ
  • 3365blood
  • 2894vasculature
  • 2858blood vessel
  • 2853bodily fluid
  • 2659vein
  • 903brain
  • 801epithelium
  • 753kidney
  • 478heart
  • 459connective tissue
  • 430lung
  • 373musculature of body
  • 336intestine
  • 298pancreas
  • 285skin of body
  • 244limb
  • 234liver
  • 220large intestine
  • 213embryo
  • 171extraembryonic component
  • 157eye
  • 142adipose tissue
  • 129stomach
  • 111muscle organ
  • 105bone element
  • 97mammary gland
  • 95placenta
  • 93small intestine
  • 92thymus
  • 91adrenal gland
  • 91uterus
  • 88artery
  • 86prostate gland
  • 73ureter
  • 64penis
  • 63spleen
  • 62gonad
  • 62lymph node
  • 60__MARKER__
  • 49spinal cord
  • 44thyroid gland
  • 42esophagus
  • 31testis
  • 30ovary
  • 25nerve
  • 24lymphoid tissue
  • 24skeleton
  • 21mouth
  • 18lymphatic vessel
  • 15breast
  • 13bronchus
  • 13pituitary gland
  • 13urinary bladder
  • 12bone marrow
  • 12tongue
  • 12vagina
  • 5trachea
  • 4nose
  • 1embryonic structure
  • 1gallbladder
  • 1pericardium
Project
  • 336AMP
Genome assembly (visualization)
  • 261hg19
  • 129GRCh38
lab.title!
  • Bing Ren, UCSD
BIOSAMPLE
TYPE

336 results

search-icontable-tab-icon
Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
accessible chromatin
histone modifications
binding sites
eQTL
gene expression
tissue
small intestine30291511
large intestine28271311
sigmoid colon101051
transverse colon98411
Peyer's patch7731
cell line
HCT1161921
HT-29321111
SW480221111
RKO11111
Caco-231
primary cell
intestinal epithelial cell1
  • Contact
  • Terms of Use
  • AMP Consortium sign-in

©2026 Regents of the University of California.

  • UC San Diego