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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1846ChIP-seq
  • 530ATAC-seq
  • 212DNase-seq
  • 83snATAC-seq
  • 75WGBS
  • 68total RNA-seq
  • 57pCHi-C
  • 31Hi-C
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3single cell RNA-seq
  • 2HiChIP
  • 1DNAme array
Assay category
  • 1846DNA binding
  • 830DNA accessibility
  • 97DNA methylation
  • 71Transcription
  • 313D chromatin structure
Target of assay
  • 1008histone modification
  • 1007histone
  • 510narrow histone mark
  • 503transcription factor
  • 496broad histone mark
  • 333control
  • 113RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 288October, 2019
  • 218June, 2019
  • 217May, 2021
  • 196May, 2020
  • 140May, 2022
  • 120May, 2019
  • 112August, 2021
  • 110February, 2023
  • 94December, 2017
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 16January, 2021
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 3March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 2050bam
  • 1818bigWig
  • 1797bed narrowPeak
  • 1036bigBed narrowPeak
  • 985fastq
  • 391tagAlign
  • 316bed broadPeak
  • 285bigBed broadPeak
  • 271bed bed3+
  • 122tsv
  • 101zippedFastqFolder
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 21bedpe bed3+
  • 21hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1tagAlign bed3+
Organism
  • 2946Homo sapiens
Biosample type
  • 1449tissue
  • 714primary cell
  • 519cell line
  • 256in vitro differentiated cells
  • 8stem cell
Organ
  • 581liver
  • 446pancreas
  • 320epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 208connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 69blood
  • 69bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 13bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 2605AMP
  • 184T1D
  • 147HPAP
  • 9LungMap
  • 1ITG
Genome assembly (visualization)
  • 1858hg19
  • 1790GRCh38
  • 5hg18
Lab
  • 2363AMP-T2D consortium
  • 273Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 127inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
lab.title!
  • Bing Ren, UCSD
BIOSAMPLE
ASSAY

2946 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
snATAC-seq
WGBS
total RNA-seq
pCHi-C
Hi-C
RRBS
FAIRE-seq
GRO-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
single cell RNA-seq
HiChIP
DNAme array
tissue
liver1452023111
islet of Langerhans7167174111
kidney2775136111
heart left ventricle35234111
body of pancreas35442
primary cell
monocyte8515211
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
CD8-positive, alpha-beta T cell33221
cell line
HepG236011521
GM12878601
EndoC_BH115191232
Panc11311
smooth muscle cell of the coronary artery68
in vitro differentiated cells
adipocyte67811
embryonic stem cell4061
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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