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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
34
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
34
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
broad histone mark
1
RNA binding protein
Date released
715
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
310
August, 2021
302
August, 2017
255
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
63
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
123
tsv
98
bed narrowPeak
64
xls
57
txt
42
bam
39
bigWig
17
tagAlign
4
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
309
Homo sapiens
Biosample type
229
tissue
43
cell line
35
in vitro differentiated cells
3
primary cell
Organ
130
kidney
92
heart
33
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
5
epithelium
4
pancreas
2
artery
1
adipose tissue
Project
310
AMP
Genome assembly (visualization)
98
GRCh38
53
hg19
Lab
143
AMP-T2D consortium
128
Katalin Susztak, Upenn
35
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
KPMP
organ_slims!
ovary
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
310 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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cell line
HepG2
9
17
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
14
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
3
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