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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
9
DNase-seq
7
WGBS
4
ATAC-seq
1
FAIRE-seq
1
Hi-C
1
single cell RNA-seq
Assay category
55
DNA binding
14
DNA accessibility
7
DNA methylation
1
3D chromatin structure
1
Transcription
Target of assay
52
transcription factor
19
RNA binding protein
16
recombinant protein
5
chromatin remodeller
3
control
3
other context
3
other post-translational modification
Date released
670
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
129
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
80
April, 2019
76
October, 2018
73
November, 2018
73
September, 2018
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
26
May, 2022
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
12
January, 2019
11
September, 2017
10
December, 2019
8
December, 2018
8
January, 2021
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
74
fastq
73
bam
68
bigWig
61
bed narrowPeak
61
bigBed narrowPeak
10
bed broadPeak
9
bed bed3+
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
bedpe
1
csv
1
hic
Organism
78
Homo sapiens
Biosample type
46
cell line
31
tissue
1
primary cell
Organ
53
liver
15
blood
bodily fluid
12
pancreas
9
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
78
AMP
Genome assembly (visualization)
69
GRCh38
62
hg19
Lab
73
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Karen Mohlke, UNC
Klaus Kaestner, Upenn
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
78 results
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Clear Filters
ChIP-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
Hi-C
single cell RNA-seq
cell line
HepG2
45
1
tissue
spleen
6
1
2
liver
4
2
islet of Langerhans
4
1
body of pancreas
2
2
pancreas
2
1
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primary cell
pancreatic cell
1
See all biosamples
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