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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
55
total RNA-seq
21
ChIP-seq
8
single cell RNA-seq
6
snATAC-seq
3
DNase-seq
2
STARR-seq
1
Hi-C
Assay category
73
DNA accessibility
63
Transcription
21
DNA binding
1
3D chromatin structure
Target of assay
8
histone
8
histone modification
7
recombinant protein
7
transcription factor
6
control
5
narrow histone mark
3
broad histone mark
Date released
130
August, 2021
81
June, 2019
47
September, 2023
30
October, 2019
23
April, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
2
March, 2020
Available data
80
bed narrowPeak
64
xls
57
txt
28
bam
22
bigWig
6
tsv
1
bigBed narrowPeak
1
hic
Organism
160
Homo sapiens
Biosample type
132
tissue
17
cell line
11
primary cell
Organ
160
kidney
100
heart
86
brain
69
limb
53
blood vessel
53
vasculature
42
liver
42
nerve
41
epithelium
28
artery
22
pancreas
21
eye
21
vein
9
connective tissue
embryo
4
gonad
4
ovary
2
adipose tissue
2
pituitary gland
1
lymph node
1
skin of body
Project
160
AMP
Genome assembly (visualization)
86
GRCh38
23
hg19
Lab
128
Katalin Susztak, Upenn
30
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
embryo
BIOSAMPLE
ASSAY
160 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
DNase-seq
STARR-seq
Hi-C
tissue
kidney
64
49
4
8
6
1
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
primary cell
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
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