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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
64
total RNA-seq
21
ChIP-seq
6
snATAC-seq
3
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
Assay category
170
Transcription
82
DNA accessibility
21
DNA binding
1
3D chromatin structure
Target of assay
14
histone
14
histone modification
7
broad histone mark
7
control
7
narrow histone mark
Date released
680
February, 2021
338
May, 2021
289
October, 2019
280
August, 2021
212
June, 2019
169
August, 2017
149
February, 2023
147
May, 2020
118
May, 2019
92
July, 2019
91
November, 2017
80
April, 2019
56
May, 2022
47
March, 2020
47
September, 2023
40
May, 2024
40
September, 2020
39
February, 2018
34
December, 2018
31
December, 2017
28
November, 2018
25
January, 2019
23
February, 2020
23
October, 2018
19
April, 2020
18
October, 2017
15
May, 2023
11
July, 2018
10
April, 2018
8
January, 2018
8
January, 2021
6
November, 2019
6
November, 2020
5
December, 2019
5
March, 2023
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
113
tsv
89
bed narrowPeak
64
xls
57
txt
45
bam
30
bigWig
20
tagAlign
2
bed bed3+
1
hic
Organism
279
Homo sapiens
Biosample type
227
tissue
42
in vitro differentiated cells
11
cell line
Organ
130
kidney
92
heart
liver
8
embryo
6
blood vessel
6
epithelium
6
vasculature
5
connective tissue
pancreas
2
artery
1
adipose tissue
Project
280
AMP
Genome assembly (visualization)
102
GRCh38
42
hg19
Lab
145
AMP-T2D consortium
128
Katalin Susztak, Upenn
4
Struan F.A. Grant, CHOP
3
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
lab.title!
Karen Mohlke, UNC
organ_slims!
liver
pancreas
BIOSAMPLE
ASSAY
280 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
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in vitro differentiated cells
neural progenitor cell
10
7
21
adipocyte
1
1
osteoblast
1
1
cell line
H1-hESC
8
HEK293T
2
Synthesized DNA
1
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