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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
68
total RNA-seq
39
ChIP-seq
33
DNase-seq
13
ATAC-seq
6
Hi-C
5
RRBS
2
pCHi-C
2
small RNA-seq
1
WGBS
1
single cell RNA-seq
1
snATAC-seq
Assay category
71
Transcription
47
DNA accessibility
39
DNA binding
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
150
February, 2021
43
June, 2019
26
August, 2017
10
July, 2019
8
February, 2023
7
May, 2019
5
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2021
Available data
126
bigWig
123
bam
89
txt
68
bed narrowPeak
67
tsv
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bed3
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
255
Homo sapiens
Biosample type
240
tissue
15
primary cell
Organ
794
pancreas
791
liver
684
connective tissue
491
adipose tissue
393
heart
372
epithelium
286
brain
236
vasculature
230
blood vessel
212
kidney
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
254
AMP
1
T1D
Genome assembly (visualization)
143
hg19
119
GRCh38
Lab
254
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
93
inconsistent ontology term
1
audit script error
lab.title!
Katalin Susztak, Upenn
Klaus Kaestner, Upenn
organ_slims!
lung
BIOSAMPLE
ASSAY
255 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
tissue
bone element
84
bone tissue
58
skeletal muscle tissue
1
22
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
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primary cell
skeletal muscle satellite cell
1
8
1
skeletal muscle cell
2
1
1
megakaryocyte
1
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