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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
21
DNA binding
3
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
2
control
Date released
25
October, 2019
2
March, 2020
Available data
20
bam
15
bigWig
13
bed narrowPeak
13
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
2
hic
1
bedpe bed3+
1
tar
1
tsv
Organism
27
Homo sapiens
Biosample type
22
primary cell
5
tissue
Organ
945
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
286
brain
236
vasculature
230
blood vessel
212
kidney
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
27
AMP
Genome assembly (visualization)
17
hg19
12
GRCh38
Lab
27
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Katalin Susztak, Upenn
Maike Sander, UCSD
organ_slims!
intestine
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
primary cell
endothelial cell of umbilical vein
17
2
2
1
tissue
islet of Langerhans
4
ovary
1
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