Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
DNase-seq
28
ChIP-seq
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
Assay category
185
DNA accessibility
28
DNA binding
4
Transcription
Target of assay
18
histone
18
histone modification
12
control
10
narrow histone mark
8
broad histone mark
5
nucleotide modification
3
RNA binding protein
3
transcription factor
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
293
October, 2019
211
June, 2019
200
May, 2022
191
August, 2021
174
February, 2023
168
July, 2018
120
May, 2019
107
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
24
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
217
bam
209
bigWig
206
bed narrowPeak
205
bigBed narrowPeak
184
bed bed3+
184
bed broadPeak
184
bigBed broadPeak
4
tsv
Organism
227
Homo sapiens
Biosample type
164
tissue
57
primary cell
6
cell line
Organ
81
kidney
43
musculature of body
35
heart
32
limb
30
brain
26
epithelium
24
connective tissue
18
ureter
14
pancreas
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
227
AMP
Genome assembly (visualization)
210
GRCh38
187
hg19
Lab
217
AMP-T2D consortium
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
32
inconsistent ontology term
lab.title!
Katalin Susztak, Upenn
month_released!
April, 2018
organ_slims!
eye
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
MeRIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
osteoblast
1
4
1
cardiac muscle cell
1
3
+ See 17 more…
cell line
EndoC_BH1
6
See all biosamples
Download