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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ATAC-seq
41
WGBS
34
single cell RNA-seq
30
total RNA-seq
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
101
DNA accessibility
64
Transcription
41
DNA methylation
Target of assay
5
control
5
nucleotide modification
Date released
715
February, 2021
403
August, 2017
392
May, 2021
369
November, 2017
341
May, 2020
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
182
August, 2021
168
July, 2018
115
May, 2019
108
July, 2019
77
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
35
May, 2024
33
December, 2018
26
February, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
134
zippedFastqFolder
40
bed narrowPeak
30
bam
25
bigWig
24
fastq
7
txt
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
Organism
216
Homo sapiens
Biosample type
140
primary cell
70
tissue
6
cell line
Organ
114
pancreas
86
epithelium
40
liver
6
connective tissue
2
musculature of body
Project
134
HPAP
82
AMP
Genome assembly (visualization)
45
hg19
6
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
8
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
lab.title!
Katalin Susztak, Upenn
organ_slims!
embryo
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
216 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
osteoblast
1
4
1
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
4
skeletal muscle tissue
1
1
cell line
EndoC_BH1
6
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