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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
total RNA-seq
100
ATAC-seq
69
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
1
pCHi-C
Assay category
204
Transcription
110
DNA accessibility
69
DNA binding
Target of assay
34
histone
34
histone modification
30
narrow histone mark
27
control
14
transcription factor
RNA binding protein
6
chromatin remodeller
4
broad histone mark
Date released
670
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
168
July, 2018
129
February, 2023
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
307
bam
280
bigWig
194
tsv
50
tagAlign
42
bed narrowPeak
24
fastq
15
bigBed narrowPeak
Organism
383
Homo sapiens
Biosample type
219
tissue
147
primary cell
18
cell line
Organ
199
liver
19
lung
12
blood
12
bodily fluid
7
spleen
Project
320
AMP
45
T1D
19
LungMap
Genome assembly (visualization)
280
hg19
227
GRCh38
Lab
320
AMP-T2D consortium
45
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
Audit category:
8
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
384 results
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total RNA-seq
ATAC-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
tissue
liver
143
50
lung
10
9
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
2
CD8-positive, alpha-beta T cell
2
2
+ See 24 more…
cell line
GM12878
12
HepG2
5
1
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