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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
20
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
180
Transcription
82
DNA accessibility
20
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
667
February, 2021
326
May, 2021
297
November, 2017
296
August, 2021
291
May, 2020
273
August, 2017
199
June, 2019
168
July, 2018
134
October, 2019
129
February, 2023
105
July, 2019
82
November, 2018
66
May, 2022
63
May, 2019
61
March, 2020
58
September, 2018
57
December, 2017
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
36
October, 2018
31
December, 2018
25
February, 2020
25
May, 2024
23
February, 2018
23
January, 2019
19
April, 2020
18
October, 2017
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
123
tsv
95
bed narrowPeak
64
xls
57
txt
36
bigWig
32
bam
7
tagAlign
3
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
295
Homo sapiens
Biosample type
229
tissue
38
cell line
28
in vitro differentiated cells
1
primary cell
Organ
130
kidney
92
heart
26
liver
8
embryo
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
296
AMP
Genome assembly (visualization)
96
GRCh38
49
hg19
Lab
134
AMP-T2D consortium
128
Katalin Susztak, Upenn
30
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
control
narrow histone mark
BIOSAMPLE
ASSAY
296 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
1
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
12
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
10
7
7
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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