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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
122
ChIP-seq
4
ATAC-seq
2
Hi-C
Assay category
122
DNA binding
4
DNA accessibility
2
3D chromatin structure
Target of assay
70
transcription factor
31
histone
31
histone modification
25
control
16
narrow histone mark
15
broad histone mark
RNA binding protein
5
chromatin remodeller
Date released
670
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
168
July, 2018
129
February, 2023
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
66
May, 2022
65
October, 2018
64
March, 2020
60
November, 2019
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
August, 2022
1
October, 2022
Available data
124
fastq
123
bam
96
bed narrowPeak
96
bigWig
74
bigBed narrowPeak
15
bed bed3+
1
bed broadPeak
1
bedpe
1
hic
Organism
128
Homo sapiens
Biosample type
58
tissue
41
in vitro differentiated cells
26
cell line
3
stem cell
Organ
60
liver
25
blood
25
bodily fluid
17
epithelium
13
embryo
7
spleen
5
pancreas
Project
128
AMP
Genome assembly (visualization)
104
hg19
103
GRCh38
Lab
123
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
28
inconsistent control
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
128 results
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Clear Filters
ChIP-seq
ATAC-seq
Hi-C
tissue
liver
37
right lobe of liver
9
spleen
7
islet of Langerhans
4
1
in vitro differentiated cells
hepatocyte
13
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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cell line
GM12878
25
HepG2
1
stem cell
hESC
3
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