Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ATAC-seq
20
total RNA-seq
13
ChIP-seq
3
Hi-C
3
single cell RNA-seq
Assay category
30
DNA accessibility
23
Transcription
13
DNA binding
3
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
1
RNA binding protein
1
transcription factor
Date released
670
February, 2021
406
November, 2017
404
August, 2017
399
May, 2021
341
May, 2020
318
August, 2021
314
October, 2019
218
June, 2019
168
July, 2018
128
February, 2023
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
66
May, 2022
64
March, 2020
61
November, 2019
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
5
March, 2019
4
August, 2018
3
June, 2018
1
August, 2022
1
March, 2023
Available data
63
bam
37
bed narrowPeak
34
bigWig
23
tsv
4
fastq
3
hic
2
bedpe bed3+
1
bed broadPeak
1
bedpe
Organism
69
Homo sapiens
Biosample type
45
tissue
16
cell line
5
in vitro differentiated cells
3
primary cell
Organ
61
pancreas
17
epithelium
1
adipose tissue
1
connective tissue
Project
69
AMP
Genome assembly (visualization)
65
hg19
62
GRCh38
Lab
64
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
23
inconsistent ontology term
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
69 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
tissue
islet of Langerhans
23
19
2
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
13
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
primary cell
pancreatic cell
1
pancreatic ductal cell
1
unclassified exocrine cell
1
Download