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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 129ChIP-seq
  • 78total RNA-seq
  • 70single cell RNA-seq
  • 54ATAC-seq
  • 19DNase-seq
  • 6MeRIP-seq
  • 6RRBS
  • 5Hi-C
  • 2Capture-C
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1FAIRE-seq
  • 1RNA microarray
Assay category
  • 148Transcription
  • 129DNA binding
  • 74DNA accessibility
  • 6DNA methylation
  • 53D chromatin structure
Target of assay
  • 93histone
  • 93histone modification
  • 49narrow histone mark
  • 44broad histone mark
  • 30control
  • 9transcription factor
  • 8RNA binding protein
  • 3nucleotide modification
  • 1chromatin remodeller
Date released
  • 61September, 2018
  • 35October, 2019
  • 33April, 2018
  • 33July, 2018
  • 29August, 2017
  • 26February, 2021
  • 26May, 2021
  • 20June, 2019
  • 19December, 2017
  • 16November, 2019
  • 15February, 2023
  • 13July, 2019
  • 6August, 2021
  • 6December, 2019
  • 6March, 2020
  • 6November, 2017
  • 6November, 2020
  • 5May, 2019
  • 5September, 2017
  • 3August, 2018
  • 2October, 2018
  • 1June, 2018
Available data
  • 317bam
  • 291bigWig
  • 188fastq
  • 151bed narrowPeak
  • 150tsv
  • 76bigBed narrowPeak
  • 22bed broadPeak
  • 22bigBed broadPeak
  • 21bed bed3+
  • 7tagAlign
  • 6bed bedMethyl
  • 6bigBed bedMethyl
  • 3hic
  • 2bedpe bed3+
  • 2hdf5
  • 1tar
Organism
  • 371Homo sapiens
Biosample type
  • 254primary cell
  • 79cell line
  • 24in vitro differentiated cells
  • 15tissue
Organ
  • 794pancreas
  • 791liver
  • 684connective tissue
  • 491adipose tissue
  • 393heart
  • 372epithelium
  • 354kidney
  • 286brain
  • 236vasculature
  • 230blood vessel
  • 159bone element
  • 141artery
  • 122limb
  • 97musculature of body
  • 69blood
  • 69bodily fluid
  • 61eye
  • 43nerve
  • 37embryo
  • 25spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 368AMP
  • 4T1D
Genome assembly (visualization)
  • 308hg19
  • 284GRCh38
Lab
  • 366AMP-T2D consortium
  • Klaus Kaestner, Upenn
  • 6Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
  • 91inconsistent ontology term
  • 2audit script error
Audit category:
  • 21missing controlled_by
Audit category:
  • 5inconsistent control read length
lab.title!
  • Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY

372 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
MeRIP-seq
RRBS
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
pancreatic beta cell1310127
pancreatic alpha cell1310126
pancreatic ductal cell134104
pancreatic acinar cell84125
endothelial cell of umbilical vein17221
epithelial cell of proximal tubule10111
hepatocyte4511
pancreatic delta cell11
pancreatic polypeptide-secreting cell9
kidney epithelial cell5111
brain microvascular endothelial cell311
choroid plexus epithelial cell311
retinal pigment epithelial cell311
kidney tubule cell13
kidney glomerular epithelial cell12
renal cortical epithelial cell111
endothelial cell2
enteroendocrine cell2
glomerular endothelial cell11
glomerular visceral epithelial cell2
Liver fetal (hepatocyte)1
endothelial cell of coronary artery1
endothelial cell of hepatic sinusoid1
kidney capillary endothelial cell1
cell line
EndoC_BH11533196121
glomerular visceral epithelial cell11
in vitro differentiated cells
hepatocyte15
Hepatic endoderm4
pancreatic PP cell3
endothelial cell1
intermediate endothelial cell1
tissue
pigmented layer of retina212
renal glomerulus1
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