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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
3
pCHi-C
2
WGBS
1
ATAC-seq
1
DNase-seq
Assay category
6
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
control
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
6
November, 2018
3
December, 2018
3
March, 2020
1
October, 2017
Available data
10
bam
10
bigWig
10
fastq
8
bed narrowPeak
7
bigBed narrowPeak
3
tsv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
13
Homo sapiens
Biosample type
13
tissue
Organ
590
pancreas
581
liver
571
connective tissue
435
adipose tissue
312
kidney
276
heart
249
epithelium
159
bone element
143
vasculature
139
blood vessel
112
artery
68
brain
62
blood
62
bodily fluid
57
eye
57
musculature of body
56
limb
20
lung
18
embryo
18
ureter
16
skeleton
11
spleen
8
nerve
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
13
AMP
Genome assembly (visualization)
10
GRCh38
8
hg19
Lab
13
AMP-T2D consortium
lab.title!
Klaus Kaestner, Upenn
target.investigated_as!
control
histone
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
pCHi-C
WGBS
ATAC-seq
DNase-seq
tissue
spleen
6
1
2
1
1
sigmoid colon
1
small intestine
1
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