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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
66
ChIP-seq
28
DNase-seq
17
total RNA-seq
8
WGBS
3
ATAC-seq
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
111
Transcription
66
DNA binding
31
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
53
histone
53
histone modification
30
broad histone mark
23
narrow histone mark
7
RNA binding protein
7
transcription factor
6
control
Date released
92
August, 2021
April, 2019
40
May, 2024
33
June, 2019
22
July, 2019
16
May, 2019
8
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
113
bigWig
113
tsv
91
bed narrowPeak
79
bam
43
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
224
Homo sapiens
Biosample type
212
tissue
11
primary cell
1
in vitro differentiated cells
Organ
894
pancreas
791
liver
683
connective tissue
523
epithelium
491
adipose tissue
336
heart
331
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
113
GRCh38
69
hg19
Lab
184
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
April, 2019
June, 2018
organ_slims!
artery
BIOSAMPLE
ASSAY
224 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
left cardiac atrium
18
40
1
heart left ventricle
18
3
3
4
2
1
1
1
heart
1
5
18
4
1
1
1
right cardiac atrium
18
6
1
1
heart right ventricle
17
1
1
2
1
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
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