Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
90
ChIP-seq
38
ATAC-seq
9
total RNA-seq
6
single cell RNA-seq
4
DNase-seq
4
Hi-C
2
WGBS
1
FAIRE-seq
1
pCHi-C
Assay category
90
DNA binding
43
DNA accessibility
15
Transcription
4
3D chromatin structure
2
DNA methylation
Target of assay
69
histone
69
histone modification
45
broad histone mark
24
narrow histone mark
18
control
3
RNA binding protein
3
transcription factor
Date released
February, 2021
50
May, 2019
47
October, 2019
35
February, 2023
10
July, 2019
6
August, 2021
June, 2019
4
March, 2020
3
February, 2020
Available data
110
bed narrowPeak
106
bam
85
bigWig
72
bigBed narrowPeak
16
tsv
6
bed broadPeak
6
bigBed broadPeak
5
bed bed3+
3
hic
2
bedpe bed3+
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
tar
Organism
155
Homo sapiens
Biosample type
130
tissue
25
primary cell
Organ
859
pancreas
786
liver
472
epithelium
292
heart
265
kidney
brain
210
connective tissue
163
vasculature
159
blood vessel
104
adipose tissue
84
limb
73
artery
61
blood
61
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
155
AMP
Genome assembly (visualization)
116
GRCh38
87
hg19
Lab
155
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2021
June, 2019
organ_slims!
brain
BIOSAMPLE
ASSAY
155 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
DNase-seq
Hi-C
WGBS
FAIRE-seq
pCHi-C
tissue
coronary artery
5
36
1
tibial artery
23
1
1
2
aorta
13
1
4
1
2
1
thoracic aorta
16
1
2
ascending aorta
16
2
+ See 1 more…
primary cell
endothelial cell of umbilical vein
17
2
2
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
See all biosamples
Download