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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
25
ChIP-seq
15
total RNA-seq
5
DNase-seq
5
pCHi-C
2
ATAC-seq
2
WGBS
1
RRBS
Assay category
25
DNA binding
15
Transcription
7
DNA accessibility
3
DNA methylation
Target of assay
9
control
9
histone
9
histone modification
7
transcription factor
5
narrow histone mark
4
broad histone mark
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
31
bam
24
fastq
22
bigWig
20
bed narrowPeak
19
bigBed narrowPeak
5
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
2
tsv
Organism
55
Homo sapiens
Biosample type
50
tissue
5
primary cell
Organ
857
pancreas
791
liver
669
connective tissue
490
adipose tissue
472
epithelium
357
heart
354
kidney
285
brain
201
vasculature
195
blood vessel
150
bone element
122
limb
106
artery
96
musculature of body
61
blood
61
bodily fluid
43
nerve
37
embryo
30
eye
25
spleen
22
vein
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
55
AMP
Genome assembly (visualization)
22
GRCh38
21
hg19
Lab
55
AMP-T2D consortium
lab.title!
Kyle Gaulton, UCSD
month_released!
February, 2023
BIOSAMPLE
ASSAY
55 results
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ChIP-seq
total RNA-seq
DNase-seq
pCHi-C
ATAC-seq
WGBS
RRBS
tissue
spleen
20
1
1
1
2
islet of Langerhans
2
14
4
1
retina
1
3
primary cell
retinal pigment epithelial cell
3
1
1
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