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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
ChIP-seq
33
DNase-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
81
DNA binding
36
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
37
transcription factor
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
9
control
4
RNA binding protein
4
chromatin remodeller
Date released
43
June, 2019
27
December, 2018
26
August, 2017
January, 2019
15
November, 2018
10
July, 2019
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
108
bigWig
99
bam
99
bed narrowPeak
86
bigBed narrowPeak
46
bed broadPeak
44
fastq
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
139
Homo sapiens
Biosample type
82
tissue
43
cell line
14
primary cell
Organ
895
pancreas
704
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
347
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
eye
43
blood
43
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
139
AMP
Genome assembly (visualization)
113
hg19
92
GRCh38
Lab
139
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
month_released!
January, 2019
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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cell line
GM12878
42
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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