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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
8
ChIP-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
1
total RNA-seq
Assay category
8
DNA binding
3
DNA accessibility
2
3D chromatin structure
1
DNA methylation
1
Transcription
Target of assay
15
histone
15
histone modification
broad histone mark
6
narrow histone mark
2
control
Date released
12
October, 2019
2
July, 2019
1
March, 2020
Available data
12
bam
9
bigWig
8
bed narrowPeak
8
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
1
tsv
Organism
15
Homo sapiens
Biosample type
14
primary cell
1
tissue
Organ
813
pancreas
747
liver
625
connective tissue
470
adipose tissue
460
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
158
bone element
125
artery
61
blood
61
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
15
AMP
Genome assembly (visualization)
12
hg19
8
GRCh38
Lab
15
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
15 results
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ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
total RNA-seq
primary cell
endothelial cell of umbilical vein
8
2
2
1
pericardium fibroblast
1
tissue
pericardium
1
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