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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
17
ChIP-seq
11
total RNA-seq
6
Hi-C
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
Assay category
37
DNA accessibility
17
DNA binding
13
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
57
histone
histone modification
36
broad histone mark
21
narrow histone mark
17
control
Date released
35
June, 2019
18
October, 2019
10
July, 2019
7
August, 2017
5
March, 2020
3
February, 2020
May, 2022
1
January, 2018
1
May, 2019
Available data
61
bam
48
bigWig
36
bed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
35
bigBed narrowPeak
14
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
Organism
80
Homo sapiens
Biosample type
74
tissue
6
primary cell
Organ
664
pancreas
648
liver
605
connective tissue
459
adipose tissue
351
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
158
bone element
121
artery
99
brain
73
limb
61
musculature of body
60
blood
60
bodily fluid
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
52
hg19
47
GRCh38
Lab
80
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2022
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
80 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
tissue
tibial nerve
2
11
5
1
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
3
1
4
1
1
gastrocnemius medialis
1
4
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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