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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
406
ChIP-seq
59
ATAC-seq
41
WGBS
34
single cell RNA-seq
23
snATAC-seq
20
total RNA-seq
Assay category
406
DNA binding
82
DNA accessibility
54
Transcription
41
DNA methylation
Target of assay
244
transcription factor
88
histone
88
histone modification
71
control
66
recombinant protein
50
broad histone mark
38
narrow histone mark
37
RNA binding protein
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
392
bam
354
bigWig
333
bed narrowPeak
324
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
3
tar
1
bed bed3+
1
txt
Organism
583
Homo sapiens
Biosample type
315
cell line
143
primary cell
125
tissue
Organ
355
liver
91
brain
86
epithelium
81
pancreas
6
vasculature
3
blood vessel
2
musculature of body
Project
449
AMP
134
HPAP
Genome assembly (visualization)
302
hg19
280
GRCh38
Lab
409
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
Audit category:
2
audit script error
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
583 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
cell line
HepG2
315
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
+ See 2 more…
tissue
liver
20
20
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
cingulate gyrus
14
+ See 4 more…
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