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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
145
total RNA-seq
100
ATAC-seq
84
ChIP-seq
2
Hi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
pCHi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
149
Transcription
100
DNA accessibility
84
DNA binding
2
3D chromatin structure
Target of assay
28
transcription factor
27
control
27
histone
27
histone modification
27
narrow histone mark
2
RNA binding protein
2
chromatin remodeller
Date released
707
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
176
May, 2022
174
February, 2023
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
272
bam
245
bigWig
144
tsv
57
bed narrowPeak
50
tagAlign
35
fastq
30
bigBed narrowPeak
1
hic
Organism
332
Homo sapiens
Biosample type
200
tissue
103
primary cell
31
cell line
2
stem cell
Organ
195
liver
27
blood
27
bodily fluid
7
spleen
Project
331
AMP
4
community
1
ITG
Genome assembly (visualization)
245
hg19
193
GRCh38
Lab
331
AMP-T2D consortium
Kyle Gaulton, UCSD
4
Anna Gloyn, Oxford
1
ITG
Audit category:
4
inconsistent ontology term
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
organ_slims!
skeleton
BIOSAMPLE
ASSAY
336 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
CRISPR RNA-seq
CRISPRi RNA-seq
pCHi-C
shRNA RNA-seq
siRNA RNA-seq
tissue
liver
143
50
spleen
7
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 25 more…
cell line
GM12878
27
EndoC-BH1
1
1
HepG2
1
1
stem cell
SB Ad3.1
1
1
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