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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
ChIP-seq
26
total RNA-seq
14
ATAC-seq
9
DNase-seq
7
WGBS
2
single cell RNA-seq
1
FAIRE-seq
1
Hi-C
Assay category
136
DNA binding
28
Transcription
24
DNA accessibility
7
DNA methylation
1
3D chromatin structure
Target of assay
92
transcription factor
32
histone
32
histone modification
23
RNA binding protein
17
broad histone mark
16
recombinant protein
15
narrow histone mark
10
control
9
chromatin remodeller
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
196
fastq
193
bam
182
bigWig
149
bed narrowPeak
117
bigBed narrowPeak
26
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
csv
Organism
196
Homo sapiens
Biosample type
89
cell line
74
primary cell
33
tissue
Organ
79
pancreas
61
epithelium
54
liver
42
blood
42
bodily fluid
16
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
196
AMP
Genome assembly (visualization)
181
GRCh38
173
hg19
Lab
196
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
35
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
single cell RNA-seq
FAIRE-seq
Hi-C
cell line
HepG2
45
1
1
GM12878
42
primary cell
pancreatic ductal cell
13
4
4
pancreatic beta cell
10
4
pancreatic acinar cell
8
2
3
pancreatic alpha cell
10
3
pancreatic endocrine cell
11
+ See 1 more…
tissue
spleen
13
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 2 more…
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