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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
9
total RNA-seq
5
MeRIP-seq
1
ATAC-seq
1
DNase-seq
Assay category
21
DNA binding
9
Transcription
2
DNA accessibility
Target of assay
14
transcription factor
control
7
histone
7
histone modification
6
RNA binding protein
6
chromatin remodeller
5
nucleotide modification
4
broad histone mark
3
narrow histone mark
Date released
712
February, 2021
338
August, 2017
335
November, 2017
307
August, 2021
275
October, 2019
273
May, 2020
182
February, 2023
174
May, 2022
169
June, 2019
168
July, 2018
163
May, 2021
95
July, 2019
91
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
59
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
23
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
11
November, 2020
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
32
bam
31
bigWig
26
fastq
23
bed narrowPeak
22
bigBed narrowPeak
9
tsv
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
37
Homo sapiens
Biosample type
23
cell line
8
tissue
6
primary cell
Organ
15
blood
15
bodily fluid
6
connective tissue
6
spleen
5
liver
5
pancreas
3
epithelium
Project
37
AMP
Genome assembly (visualization)
32
GRCh38
32
hg19
Lab
32
AMP-T2D consortium
5
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
organ_slims!
musculature of body
target.investigated_as!
control
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
total RNA-seq
MeRIP-seq
ATAC-seq
DNase-seq
cell line
GM12878
15
HepG2
5
EndoC_BH1
3
tissue
spleen
6
islet of Langerhans
2
primary cell
osteoblast
4
1
1
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