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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ATAC-seq
41
WGBS
37
single cell RNA-seq
22
snATAC-seq
21
total RNA-seq
1
Hi-C
Assay category
96
DNA accessibility
58
Transcription
41
DNA methylation
1
3D chromatin structure
Date released
715
February, 2021
411
August, 2017
406
November, 2017
319
August, 2021
314
October, 2019
296
May, 2020
218
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
164
May, 2021
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
20
bed narrowPeak
20
bigWig
1
bam
1
bed bed3+
1
bed broadPeak
1
bedpe
1
fastq
1
hic
1
txt
Organism
196
Homo sapiens
Biosample type
134
primary cell
62
tissue
Organ
85
pancreas
80
epithelium
40
liver
14
kidney
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
62
AMP
Genome assembly (visualization)
25
hg19
14
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
14
Katalin Susztak, Upenn
3
AMP-T2D consortium
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
1
audit script error
lab.title!
Kyle Gaulton, UCSD
month_released!
December, 2018
BIOSAMPLE
ASSAY
196 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
Hi-C
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
kidney
11
3
islet of Langerhans
4
1
skeletal muscle tissue
1
1
adipose tissue
1
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