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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
59
ATAC-seq
48
WGBS
35
single cell RNA-seq
22
snATAC-seq
20
total RNA-seq
9
DNase-seq
1
FAIRE-seq
Assay category
91
DNA accessibility
64
DNA binding
55
Transcription
48
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
712
February, 2021
361
August, 2017
335
November, 2017
307
August, 2021
275
October, 2019
273
May, 2020
210
June, 2019
182
February, 2023
176
May, 2022
168
July, 2018
163
May, 2021
105
July, 2019
97
May, 2019
82
November, 2018
73
December, 2017
73
September, 2018
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
October, 2017
19
April, 2020
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
100
bigWig
93
bed narrowPeak
82
fastq
81
bam
73
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
1
txt
Organism
258
Homo sapiens
Biosample type
135
primary cell
65
tissue
58
cell line
Organ
93
liver
87
pancreas
80
epithelium
12
blood
12
bodily fluid
6
spleen
2
brain
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
124
AMP
Genome assembly (visualization)
92
hg19
79
GRCh38
Lab
134
Klaus Kaestner, Upenn
84
AMP-T2D consortium
40
Karen Mohlke, UNC
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
258 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
snATAC-seq
total RNA-seq
DNase-seq
FAIRE-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
pancreatic cell
1
tissue
liver
4
20
20
2
spleen
3
2
1
body of pancreas
2
2
pancreas
2
1
brain
2
+ See 3 more…
cell line
HepG2
45
1
GM12878
12
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