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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
34
ChIP-seq
22
DNase-seq
2
single cell RNA-seq
Assay category
67
DNA accessibility
58
Transcription
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
26
October, 2019
20
June, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
Available data
120
bam
103
bigWig
92
bed narrowPeak
58
tsv
43
bigBed narrowPeak
22
bed bed3+
22
bed broadPeak
22
bigBed broadPeak
6
tagAlign
Organism
159
Homo sapiens
Biosample type
91
tissue
66
cell line
2
primary cell
Organ
895
pancreas
791
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
122
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
159
AMP
Genome assembly (visualization)
146
GRCh38
111
hg19
Lab
159
AMP-T2D consortium
lab.title!
Kyle Gaulton, UCSD
organ_slims!
lymph node
BIOSAMPLE
ASSAY
159 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
tissue
coronary artery
1
36
5
2
tibial artery
1
1
23
2
renal pelvis
10
left renal pelvis
4
right renal pelvis
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
52
8
6
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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