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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
58
ChIP-seq
29
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
1
RRBS
Assay category
58
DNA binding
33
DNA accessibility
19
Transcription
1
DNA methylation
Target of assay
52
transcription factor
11
RNA binding protein
10
chromatin remodeller
control
4
histone
4
histone modification
4
narrow histone mark
Date released
31
February, 2023
27
December, 2018
21
October, 2019
15
January, 2019
12
November, 2018
6
June, 2019
1
February, 2020
1
January, 2018
1
July, 2019
Available data
87
bed narrowPeak
61
bigWig
60
bam
60
bigBed narrowPeak
54
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
115
Homo sapiens
Biosample type
56
tissue
55
cell line
4
primary cell
Organ
842
pancreas
683
liver
648
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
158
bone element
132
artery
105
limb
90
musculature of body
60
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
115
AMP
Genome assembly (visualization)
89
hg19
60
GRCh38
Lab
115
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
RRBS
tissue
islet of Langerhans
2
1
14
4
retina
15
3
3
pigmented layer of retina
12
2
cell line
GM12878
54
1
primary cell
retinal pigment epithelial cell
2
1
1
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