Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
36
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
103
DNA binding
45
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
51
transcription factor
50
histone
50
histone modification
34
broad histone mark
control
16
narrow histone mark
10
RNA binding protein
10
chromatin remodeller
Date released
53
October, 2019
32
June, 2019
27
December, 2018
15
January, 2019
12
November, 2018
6
February, 2021
6
May, 2019
5
July, 2019
3
February, 2020
1
January, 2018
Available data
151
bam
146
bed narrowPeak
146
bigWig
138
bigBed narrowPeak
54
fastq
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
160
Homo sapiens
Biosample type
105
tissue
55
cell line
Organ
842
pancreas
683
liver
648
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
158
bone element
132
artery
105
limb
90
musculature of body
60
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
160
AMP
Genome assembly (visualization)
151
hg19
150
GRCh38
Lab
160
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
1
inconsistent ontology term
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
160 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
24
2
1
5
tibial artery
18
2
1
1
muscle of leg
6
13
1
muscle of arm
17
gastrocnemius medialis
1
4
+ See 9 more…
cell line
GM12878
54
1
See all biosamples
Download