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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
1
ATAC-seq
1
pCHi-C
Assay category
54
DNA binding
11
DNA accessibility
9
Transcription
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
control
1
histone
1
histone modification
1
narrow histone mark
Date released
27
December, 2018
19
April, 2020
15
January, 2019
12
November, 2018
1
January, 2018
1
March, 2020
Available data
55
bigWig
54
bam
54
bed narrowPeak
54
bigBed narrowPeak
54
fastq
1
tsv
Organism
74
Homo sapiens
Biosample type
55
cell line
20
tissue
Organ
842
pancreas
683
liver
648
connective tissue
494
epithelium
467
adipose tissue
373
heart
342
kidney
255
brain
214
vasculature
209
blood vessel
158
bone element
132
artery
105
limb
90
musculature of body
60
eye
55
blood
55
bodily fluid
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
56
AMP
19
LungMap
Genome assembly (visualization)
55
hg19
54
GRCh38
Lab
56
AMP-T2D consortium
19
Xin Sun, UCSD
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
target.investigated_as!
control
BIOSAMPLE
ASSAY
75 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
pCHi-C
cell line
GM12878
54
1
tissue
lung
10
9
1
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