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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
5
RRBS
5
total RNA-seq
2
ATAC-seq
2
Hi-C
2
small RNA-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
92
DNA binding
8
Transcription
5
DNA methylation
4
DNA accessibility
2
3D chromatin structure
Target of assay
51
transcription factor
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
11
control
10
RNA binding protein
10
chromatin remodeller
Date released
27
December, 2018
26
August, 2017
18
January, 2019
15
November, 2018
11
June, 2019
5
July, 2019
5
March, 2020
2
January, 2018
2
May, 2022
1
February, 2020
Available data
84
bigWig
77
bam
76
bed narrowPeak
63
bigBed narrowPeak
62
fastq
15
tagAlign
14
bed broadPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bed bed3+
2
bedpe bed3+
2
hic
1
bigBed broadPeak
1
txt
Organism
112
Homo sapiens
Biosample type
61
cell line
37
tissue
14
primary cell
Organ
895
pancreas
709
liver
683
connective tissue
524
epithelium
491
adipose tissue
393
heart
347
kidney
286
brain
236
vasculature
230
blood vessel
158
bone element
141
artery
limb
96
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
112
AMP
Genome assembly (visualization)
90
hg19
69
GRCh38
Lab
112
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
1
audit script error
1
inconsistent control
lab.title!
Kyle Gaulton, UCSD
organ_slims!
limb
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
112 results
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Clear Filters
ChIP-seq
RRBS
total RNA-seq
ATAC-seq
Hi-C
small RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
snATAC-seq
cell line
GM12878
60
1
tissue
skeletal muscle tissue
22
4
1
1
1
1
1
psoas muscle
2
2
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
2
1
1
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