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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1710ChIP-seq
  • 497ATAC-seq
  • 212DNase-seq
  • 75WGBS
  • 65snATAC-seq
  • 40pCHi-C
  • 34Hi-C
  • 23total RNA-seq
  • 21RRBS
  • 5FAIRE-seq
  • 5GRO-seq
  • 4Capture-C
  • 3single cell RNA-seq
  • 1DNAme array
  • 1whole genome sequencing assay
Assay category
  • 1710DNA binding
  • 779DNA accessibility
  • 97DNA methylation
  • 343D chromatin structure
  • 26Transcription
  • 1DNA sequencing
Target of assay
  • 877histone modification
  • 876histone
  • 502transcription factor
  • 452narrow histone mark
  • 423broad histone mark
  • 329control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5other context
  • 5other post-translational modification
Date released
  • 406November, 2017
  • 315August, 2017
  • 288October, 2019
  • 218June, 2019
  • 151May, 2020
  • 133August, 2021
  • 122May, 2022
  • 120May, 2019
  • 94December, 2017
  • 92February, 2023
  • 87November, 2018
  • 80April, 2019
  • 74October, 2018
  • 66February, 2021
  • 59July, 2019
  • 49March, 2020
  • 46September, 2018
  • 41May, 2021
  • 41November, 2019
  • 40May, 2024
  • 35December, 2018
  • 30January, 2019
  • 24February, 2018
  • 23October, 2017
  • 11May, 2023
  • 11September, 2017
  • 9April, 2020
  • 8January, 2018
  • 7August, 2020
  • 5March, 2019
  • 3October, 2022
  • 3September, 2020
  • 2November, 2020
  • 1August, 2018
  • 1August, 2022
  • 1March, 2023
Available data
  • 1903bam
  • 1679bed narrowPeak
  • 1665bigWig
  • 1036bigBed narrowPeak
  • 967fastq
  • 316bed broadPeak
  • 307tagAlign
  • 285bigBed broadPeak
  • 271bed bed3+
  • 101zippedFastqFolder
  • 77tsv
  • 64xls
  • 36bed bedMethyl
  • 36bigBed bedMethyl
  • 23bedpe bed3+
  • 23hic
  • 12bed bed3
  • 7bed bedgraph
  • 5hdf5
  • 4tar
  • 4txt
  • 3cool
  • 2ibed
  • 1bedpe
  • 1tagAlign bed3+
  • 1vcf
Organism
  • 2696Homo sapiens
Biosample type
  • 1412tissue
  • 534cell line
  • 528primary cell
  • 214in vitro differentiated cells
  • 8stem cell
Organ
  • 601liver
  • 410pancreas
  • 320epithelium
  • 265brain
  • 231heart
  • 226kidney
  • 207connective tissue
  • 171vasculature
  • 165blood vessel
  • 119limb
  • 90adipose tissue
  • 88musculature of body
  • 85artery
  • 61blood
  • 61bodily fluid
  • 42eye
  • 42nerve
  • 25spleen
  • 23embryo
  • 22vein
  • 18ureter
  • 12bone element
  • 12skeleton
  • 10lung
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pericardium
  • 2pituitary gland
  • 1adrenal gland
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1thymus
  • 1urinary bladder
Project
  • 2535AMP
  • 147HPAP
  • 9LungMap
  • 4T1D
  • 1ITG
Genome assembly (visualization)
  • 1690hg19
  • 1662GRCh38
  • 5hg18
Lab
  • 2363AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 147Klaus Kaestner, Upenn
  • 82Katalin Susztak, Upenn
  • 40Patrick T. Ellinor, Broad
  • 23Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 9Xin Sun, UCSD
  • 7Struan F.A. Grant, CHOP
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 122inconsistent ontology term
  • 33audit script error
  • 28inconsistent control
  • 1inconsistent replicate
Audit category:
  • 89missing controlled_by
Audit category:
  • 56inconsistent control read length
  • 9inconsistent control run_type
  • 3inconsistent assembly
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

2696 results

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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
WGBS
snATAC-seq
pCHi-C
Hi-C
total RNA-seq
RRBS
FAIRE-seq
GRO-seq
Capture-C
single cell RNA-seq
DNAme array
whole genome sequencing assay
tissue
liver1452023111
kidney2775136111
islet of Langerhans7139114311
heart left ventricle35234111
body of pancreas35442
cell line
HepG2378112251
GM12878601
EndoC_BH1151912
Panc11311
smooth muscle cell of the coronary artery68
primary cell
pancreatic alpha cell1335311
pancreatic beta cell1323161
Langerhans cell48
naive thymus-derived CD4-positive, alpha-beta T cell222
pancreatic endocrine cell23
in vitro differentiated cells
adipocyte67811
neural progenitor cell2110
pancreatic endoderm181
hepatocyte15
definitive endodermal cell81
stem cell
hESC31
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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