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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 124ChIP-seq
  • 116total RNA-seq
  • 90ATAC-seq
  • 89single cell RNA-seq
  • 27DNase-seq
  • 24pCHi-C
  • 11small RNA-seq
  • 9Hi-C
  • 4MeRIP-seq
  • 3FAIRE-seq
  • 2Capture-C
  • 2snDrop-seq
  • 1DNAme array
  • 1snATAC-seq
Assay category
  • 216Transcription
  • 124DNA binding
  • 121DNA accessibility
  • 93D chromatin structure
  • 1DNA methylation
Target of assay
  • 87histone
  • 87histone modification
  • 63narrow histone mark
  • 24broad histone mark
  • 22transcription factor
  • 17control
  • 4RNA binding protein
  • 2nucleotide modification
Date released
  • 50October, 2019
  • 48August, 2021
  • 47May, 2020
  • 44July, 2018
  • 41May, 2021
  • 39April, 2018
  • 36July, 2019
  • 33August, 2017
  • 32March, 2020
  • 30June, 2019
  • 29February, 2023
  • 25February, 2020
  • 11February, 2021
  • 7October, 2017
  • 5March, 2019
  • 4November, 2020
  • 3August, 2018
  • 3December, 2017
  • 3October, 2022
  • 2May, 2022
  • 2November, 2018
  • 2September, 2017
  • 1April, 2019
  • 1February, 2018
  • 1June, 2018
  • 1March, 2023
  • 1November, 2019
  • 1October, 2018
  • 1September, 2018
Available data
  • 373bam
  • 353bigWig
  • 238tsv
  • 129fastq
  • 127bed narrowPeak
  • 70tagAlign
  • 68bed bed3+
  • 40bigBed narrowPeak
  • 26bed broadPeak
  • 24bigBed broadPeak
  • 8hic
  • 7bedpe bed3+
  • 6bed bed3
  • 5txt
  • 3cool
  • 2csv
  • 1bedpe
  • 1tagAlign bed3+
Organism
  • 503Homo sapiens
Biosample type
  • 224tissue
  • 186primary cell
  • 92in vitro differentiated cells
  • 1stem cell
Organ
  • 120pancreas
  • 81epithelium
  • 71brain
  • 57connective tissue
  • 25heart
  • 19kidney
  • 17adipose tissue
  • 16liver
  • 9musculature of body
  • 8bone element
  • 8skeleton
  • 7blood vessel
  • 7vasculature
  • 4artery
  • 3eye
  • 3limb
  • 2embryo
  • 2intestine
  • 1adrenal gland
  • 1esophagus
  • 1gonad
  • 1large intestine
  • 1lung
  • 1nerve
  • 1ovary
  • 1pericardium
  • 1pituitary gland
  • 1small intestine
  • 1spinal cord
  • 1spleen
  • 1stomach
  • 1thymus
  • 1urinary bladder
  • 1vein
Project
  • 495AMP
  • 4T1D
  • 3HPAP
  • 1ITG
Genome assembly (visualization)
  • 380hg19
  • 317GRCh38
Lab
  • 483AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 4Bing Ren, UCSD
  • 4Rohit N. Kulkarni, M.D., Ph.D.
  • 4Struan F.A. Grant, CHOP
  • 3Klaus Kaestner, Upenn
  • 2Mark McCarthy, Oxford
  • 1ITG
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 47inconsistent ontology term
  • 4audit script error
Audit category:
  • 14missing controlled_by
Audit category:
  • 4inconsistent control read length
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

503 results

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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
small RNA-seq
Hi-C
MeRIP-seq
FAIRE-seq
Capture-C
snDrop-seq
DNAme array
snATAC-seq
tissue
islet of Langerhans22576124
liver62111
brain612
heart21411
frontal cortex2211
primary cell
pancreatic alpha cell111
pancreatic beta cell111
pancreatic delta cell10
pancreatic acinar cell81
pancreatic ductal cell9
in vitro differentiated cells
neural progenitor cell21710
adipocyte7141
cardiomyocytes12
induced pluripotent stem cell9
cardiomyocytes (cardiac muscle cell)11
stem cell
mesenchymal stem cell1
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