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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 327ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 327DNA binding
  • 3Transcription
Target of assay
  • 883histone modification
  • 882histone
  • 502transcription factor
  • 454narrow histone mark
  • 427broad histone mark
  • 335control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 71November, 2017
  • 50August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 21December, 2017
  • 14April, 2019
  • 12August, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 6September, 2017
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
  • 1May, 2021
Available data
  • 306bam
  • 168fastq
  • 68tagAlign
  • 20bigWig
  • 9bed bed3+
  • 3tsv
Organism
  • 334Homo sapiens
Biosample type
  • 187tissue
  • 83cell line
  • 32in vitro differentiated cells
  • 32primary cell
  • 1stem cell
Organ
  • 108liver
  • 53pancreas
  • 35connective tissue
  • 31brain
  • 30epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 7embryo
  • 6blood
  • 6bodily fluid
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 335AMP
Genome assembly (visualization)
  • 29hg19
  • 12GRCh38
Lab
  • 326AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

335 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver43
islet of Langerhans132
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
in vitro differentiated cells
adipocyte8
neural progenitor cell7
pancreatic endoderm5
Hepatic endoderm2
definitive endodermal cell2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
cardiac fibroblast2
cerebellar granule cell2
endothelial cell of umbilical vein2
stem cell
hESC1
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