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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 454ChIP-seq
Assay category
  • 454DNA binding
Target of assay
  • 883histone modification
  • 882histone
  • 502transcription factor
  • 454narrow histone mark
  • 427broad histone mark
  • 335control
  • 109RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 141October, 2019
  • 88August, 2017
  • 38November, 2017
  • 34May, 2019
  • 27May, 2020
  • 23April, 2019
  • 16December, 2017
  • 15May, 2024
  • 15September, 2018
  • 11August, 2021
  • 11June, 2019
  • 11October, 2018
  • 8February, 2018
  • 4May, 2021
  • 4November, 2019
  • 3January, 2019
  • 3March, 2020
  • 2October, 2017
Available data
  • 390bigWig
  • 379bed narrowPeak
  • 365bam
  • 149bigBed narrowPeak
  • 134tagAlign
  • 110fastq
  • 29bed broadPeak
  • 14bigBed broadPeak
  • 13bed bed3+
  • 1tagAlign bed3+
Organism
  • 452Homo sapiens
Biosample type
  • 324tissue
  • 65primary cell
  • 45in vitro differentiated cells
  • 19cell line
  • 1stem cell
Organ
  • 117brain
  • 73pancreas
  • 60liver
  • 49epithelium
  • 40heart
  • 33connective tissue
  • 26vasculature
  • 25blood vessel
  • 15kidney
  • 15limb
  • 13musculature of body
  • 12adipose tissue
  • 8embryo
  • 8nerve
  • 6artery
  • 6vein
  • 4gonad
  • 4ovary
  • 3eye
  • 2spleen
  • 1blood
  • 1bodily fluid
  • 1lymph node
  • 1pituitary gland
Project
  • 450AMP
  • 4T1D
Genome assembly (visualization)
  • 370GRCh38
  • 361hg19
Lab
  • 437AMP-T2D consortium
  • Kyle Gaulton, UCSD
  • 15Patrick T. Ellinor, Broad
  • 2Bing Ren, UCSD
Audit category:
  • 19inconsistent ontology term
Audit category:
  • 29missing controlled_by
Audit category:
  • 16inconsistent control read length
  • 1inconsistent assembly
  • 1inconsistent control run_type
lab.title!
  • Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY

454 results

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Clear Filters
ChIP-seq
tissue
liver42
islet of Langerhans37
left cardiac atrium15
subcutaneous abdominal adipose tissue11
kidney10
primary cell
pancreatic endocrine cell12
pancreatic ductal cell7
endothelial cell of umbilical vein6
skeletal muscle myoblast6
epithelial cell of proximal tubule4
in vitro differentiated cells
adipocyte16
neural progenitor cell7
pancreatic endoderm6
hepatocyte5
Hepatic endoderm2
cell line
HepG29
EndoC_BH16
Panc13
GM128781
stem cell
hESC1
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