Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
182
DNase-seq
31
ChIP-seq
11
ATAC-seq
6
single cell RNA-seq
1
total RNA-seq
Assay category
193
DNA accessibility
31
DNA binding
7
Transcription
Target of assay
19
histone
19
histone modification
11
narrow histone mark
8
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
649
February, 2021
411
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
97
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
Available data
216
bam
208
bigWig
205
bed narrowPeak
205
bigBed narrowPeak
182
bed bed3+
182
bed broadPeak
182
bigBed broadPeak
3
fastq
3
tsv
Organism
231
Homo sapiens
Biosample type
175
tissue
56
primary cell
Organ
95
kidney
43
musculature of body
35
heart
32
limb
30
brain
21
epithelium
19
connective tissue
18
ureter
7
eye
7
vasculature
blood vessel
5
pancreas
2
adipose tissue
2
artery
2
liver
Project
231
AMP
Genome assembly (visualization)
220
GRCh38
187
hg19
Lab
217
AMP-T2D consortium
14
Katalin Susztak, Upenn
Audit category:
27
inconsistent ontology term
lab.title!
Maike Sander, UCSD
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
231 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
tissue
kidney
13
11
3
heart
18
muscle of arm
17
muscle of leg
13
brain
12
+ See 33 more…
primary cell
cardiac fibroblast
3
5
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 18 more…
See all biosamples
Download