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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
MeRIP-seq
4
total RNA-seq
1
ATAC-seq
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNase-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
8
Transcription
2
DNA accessibility
1
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
707
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
284
October, 2019
205
February, 2023
200
May, 2022
189
August, 2021
168
July, 2018
137
June, 2019
115
May, 2019
97
July, 2019
94
December, 2017
88
November, 2018
76
October, 2018
73
September, 2018
62
March, 2020
61
November, 2019
59
September, 2020
57
April, 2019
49
April, 2018
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
11
September, 2017
8
January, 2018
August, 2020
7
December, 2019
5
March, 2023
4
August, 2018
4
March, 2019
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
6
bam
5
bigWig
4
tsv
2
bed narrowPeak
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
bigBed narrowPeak
1
hic
Organism
17
Homo sapiens
Biosample type
8
cell line
7
primary cell
4
tissue
2
stem cell
Organ
10
pancreas
6
connective tissue
6
epithelium
Project
16
AMP
4
community
1
ITG
Genome assembly (visualization)
7
GRCh38
6
hg19
Lab
10
Rohit N. Kulkarni, M.D., Ph.D.
6
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
6
inconsistent ontology term
lab.title!
Maike Sander, UCSD
month_released!
August, 2020
organ_slims!
kidney
BIOSAMPLE
ASSAY
21 results
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Clear Filters
MeRIP-seq
total RNA-seq
ATAC-seq
CRISPR RNA-seq
CRISPRi RNA-seq
DNase-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
cell line
EndoC_BH1
6
EndoC-BH1
1
1
primary cell
osteoblast
4
1
1
chondrocytes
1
tissue
islet of Langerhans
4
stem cell
SB Ad3.1
1
1
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