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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
120
ChIP-seq
100
ATAC-seq
1
pCHi-C
Assay category
190
Transcription
120
DNA binding
100
DNA accessibility
Target of assay
83
histone
83
histone modification
47
narrow histone mark
36
broad histone mark
35
control
2
RNA binding protein
2
transcription factor
Date released
649
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
3
March, 2019
1
August, 2022
Available data
353
bam
318
bigWig
189
tsv
85
bed narrowPeak
58
bigBed narrowPeak
50
tagAlign
Organism
411
Homo sapiens
Biosample type
258
tissue
152
primary cell
1
cell line
Organ
194
liver
50
blood vessel
vasculature
28
brain
21
heart
7
limb
7
musculature of body
5
artery
5
epithelium
5
kidney
2
pancreas
Project
366
AMP
45
T1D
Genome assembly (visualization)
318
hg19
264
GRCh38
Lab
366
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
11
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
organ_slims!
vasculature
BIOSAMPLE
ASSAY
411 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
tissue
liver
143
50
temporal lobe
15
angular gyrus
13
germinal matrix
12
right atrium auricular region
10
+ See 3 more…
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
1
22
CD4-positive, alpha-beta memory T cell
22
macrophage
11
kidney epithelial cell
5
B cell
2
2
+ See 25 more…
cell line
HepG2
1
See all biosamples
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