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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
29
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
29
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
control
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
31
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
425
bigWig
423
bam
401
tsv
25
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
3
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
446
Homo sapiens
Biosample type
444
tissue
2
primary cell
1
in vitro differentiated cells
Organ
774
pancreas
641
liver
603
connective tissue
447
adipose tissue
417
epithelium
327
kidney
316
heart
185
brain
169
vasculature
164
blood vessel
159
bone element
118
artery
71
limb
70
musculature of body
63
blood
63
bodily fluid
60
eye
26
embryo
20
lung
18
ureter
16
nerve
16
skeleton
13
spleen
11
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
447
AMP
Genome assembly (visualization)
426
hg19
424
GRCh38
Lab
447
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
lab.title!
Mark McCarthy, Oxford
month_released!
April, 2018
target.investigated_as!
broad histone mark
control
BIOSAMPLE
ASSAY
447 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
11
3
omental fat pad
5
3
1
1
2
subcutaneous adipose tissue
7
2
1
1
1
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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