Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
37
DNase-seq
9
ATAC-seq
7
total RNA-seq
4
Hi-C
3
WGBS
Assay category
86
DNA binding
46
DNA accessibility
7
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
55
histone
55
histone modification
38
broad histone mark
25
control
17
narrow histone mark
6
transcription factor
3
other context
3
other post-translational modification
Date released
69
October, 2019
32
June, 2019
9
November, 2018
7
December, 2018
7
January, 2019
7
May, 2019
6
February, 2021
5
July, 2019
3
February, 2020
March, 2020
1
October, 2017
Available data
138
bam
107
bigWig
106
bed narrowPeak
97
bigBed narrowPeak
37
bed bed3+
37
bed broadPeak
37
bigBed broadPeak
24
fastq
7
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
146
Homo sapiens
Biosample type
146
tissue
Organ
930
pancreas
706
liver
682
connective tissue
518
epithelium
490
adipose tissue
386
heart
345
kidney
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
146
AMP
Genome assembly (visualization)
112
GRCh38
110
hg19
Lab
146
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
lab.title!
Mark McCarthy, Oxford
month_released!
March, 2020
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
146 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
5
tibial artery
23
2
1
1
spleen
20
1
1
2
muscle of leg
7
13
1
muscle of arm
17
+ See 10 more…
See all biosamples
Download