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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
10
snATAC-seq
9
single cell RNA-seq
8
ATAC-seq
6
total RNA-seq
4
DNase-seq
1
pCHi-C
Assay category
59
DNA binding
22
DNA accessibility
15
Transcription
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
69
October, 2019
19
April, 2020
6
February, 2021
2
February, 2020
1
March, 2020
Available data
74
bam
54
bed narrowPeak
52
bigWig
46
bigBed narrowPeak
7
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
96
Homo sapiens
Biosample type
97
tissue
Organ
936
pancreas
786
liver
684
connective tissue
512
epithelium
491
adipose tissue
393
heart
351
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
78
AMP
19
LungMap
Genome assembly (visualization)
58
GRCh38
58
hg19
Lab
78
AMP-T2D consortium
19
Xin Sun, UCSD
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
December, 2019
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
97 results
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ChIP-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
tissue
tibial nerve
35
1
5
2
tibial artery
23
1
1
2
lung
10
9
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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