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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
51
ChIP-seq
44
ATAC-seq
6
DNase-seq
2
Hi-C
2
single cell RNA-seq
1
FAIRE-seq
Assay category
56
Transcription
51
DNA accessibility
51
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
47
October, 2019
35
February, 2023
5
May, 2019
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
1
March, 2020
Available data
119
bam
97
bigWig
86
bed narrowPeak
56
tsv
38
bigBed narrowPeak
8
bed broadPeak
8
bigBed broadPeak
6
bed bed3+
6
tagAlign
2
hic
1
bedpe bed3+
1
tar
Organism
160
Homo sapiens
Biosample type
72
tissue
66
cell line
22
primary cell
Organ
930
pancreas
781
liver
666
connective tissue
505
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
160
AMP
Genome assembly (visualization)
137
GRCh38
107
hg19
Lab
160
AMP-T2D consortium
Audit category:
1
audit script error
lab.title!
Rohit N. Kulkarni, M.D., Ph.D.
month_released!
July, 2019
BIOSAMPLE
ASSAY
160 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
FAIRE-seq
tissue
coronary artery
1
5
35
2
tibial artery
1
23
1
2
pulmonary artery
2
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
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